scanvi

scib.integration.scanvi(adata, batch, labels)

scANVI wrapper function

Based on scVI version 0.6.7 (available through conda)

Note

Use non-normalized (count) data for scANVI!

Parameters

• adata – preprocessed anndata object

• batch – batch key in adata.obs

• labels – label key in adata.obs

Returns

anndata object containing the corrected feature matrix as well as an embedding representation of the corrected data