scanorama

scib.integration.scanorama(adata, batch, hvg=None, **kwargs)

Scanorama wrapper function

Based on scanorama version 1.7.0

Parameters

  • adata – preprocessed anndata object

  • batch – batch key in adata.obs

  • hvg – list of highly variables to subset to. If None, the full dataset will be used

Returns

anndata object containing the corrected feature matrix as well as an embedding representation of the corrected data