bbknn
- scib.integration.bbknn(adata, batch, hvg=None, **kwargs)
BBKNN wrapper function
Based on bbknn package version 1.3.9
- Parameters:
adata – preprocessed
anndata
objectbatch – batch key in
adata.obs
hvg – list of highly variables to subset to. If
None
, the full dataset will be used
- Params **kwargs:
additional parameters for BBKNN
- Returns:
anndata
object containing the corrected graph