desc
- scib.integration.desc(adata, batch, res=0.8, ncores=None, tmp_dir=None, use_gpu=False, gpu_id=None)
DESC wrapper function
Based on desc package version 2.0.3. Parametrization was taken from: https://github.com/eleozzr/desc/issues/28 as suggested by the developer (rather than from the tutorial notebook).
- Parameters:
adata – preprocessed
anndataobjectbatch – batch key in
adata.obs
- Returns:
anndataobject containing the corrected embedding