scanorama

scib.integration.scanorama(adata, batch, hvg=None, **kwargs)

Scanorama wrapper function

Based on scanorama version 1.7.0

Parameters:

• adata – preprocessed anndata object

• batch – batch key in adata.obs

• hvg – list of highly variables to subset to. If None, the full dataset will be used

Returns:

anndata object containing the corrected feature matrix as well as an embedding representation of the corrected data