trvaep
- scib.integration.trvaep(adata, batch, hvg=None)
trVAE wrapper function (
pytorch
implementatioon)Based on trvaep version 0.1.0
- Parameters:
adata – preprocessed
anndata
objectbatch – batch key in
adata.obs
hvg – list of highly variables to subset to. If
None
, the full dataset will be used
- Returns:
anndata
object containing the corrected feature matrix as well as an embedding representation of the corrected data