saucie

scib.integration.saucie(adata, batch)

SAUCIE wrapper function

Using SAUCIE source code. Parametrisation from https://github.com/KrishnaswamyLab/SAUCIE/blob/master/scripts/SAUCIE.py

Parameters:

• adata – preprocessed anndata object

• batch – batch key in adata.obs

Returns:

anndata object containing the corrected embedding